Package: biocharkitgui 0.3.1

biocharkitgui: 'Shiny' GUI for the 'biocharkit' Biochar Analysis Toolkit

A point-and-click 'Shiny' interface to the 'biocharkit' package. Lets a user upload Excel workbooks of biochar characterisation and batch adsorption data, map spreadsheet columns to the required variables via dropdown menus, and run sample-ID parsing, adsorption capacity and removal efficiency calculations, isotherm fitting (Langmuir, Freundlich, Temkin, Dubinin-Radushkevich, Sips), kinetics fitting (pseudo-first/ second-order, Elovich, intraparticle diffusion), van't Hoff thermodynamics, batch fitting across many samples at once, FTIR baseline correction, automatic peak picking and functional-group analysis, XRD peak deconvolution and crystallinity index, BET surface area, TGA analysis (DTG curve with auto-detected decomposition peaks, moisture/volatile-matter/ash/fixed-carbon straight off a curve for a single sample or in batch across many, and Kissinger non-isothermal kinetics from multi-heating-rate data), proximate/ultimate analysis, and correlation matrices, without writing any R code. Results and 600 dpi TIFF figures can be downloaded directly from the browser, along with a combined analysis report.

Authors:Sukamal Sarkar [aut, cre]

biocharkitgui_0.3.1.tar.gz
biocharkitgui_0.3.1.zip(r-4.7-any)biocharkitgui_0.3.1.zip(r-4.6-any)biocharkitgui_0.3.1.zip(r-4.5-any)
biocharkitgui_0.3.1.tgz(r-4.6-any)biocharkitgui_0.3.1.tgz(r-4.5-any)
biocharkitgui_0.3.1.tar.gz(r-4.7-any)biocharkitgui_0.3.1.tar.gz(r-4.6-any)
biocharkitgui_0.3.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
biocharkitgui/json (API)

# Install 'biocharkitgui' in R:
install.packages('biocharkitgui', repos = c('https://sukamal99.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.30 score 316 downloads 29 exports 55 dependencies

Last updated from:17b9796a5b. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK137
source / vignettesOK178
linux-releaseOK114
macos-releaseOK171
macos-oldrelOK191
windows-develOK66
windows-releaseOK79
windows-oldrelOK94
wasm-releaseOK135

Exports:gui_adsorptiongui_betgui_correlationgui_datatablegui_ftir_autopeaksgui_ftir_baselinegui_ftir_densitygui_ftir_peaksgui_isothermgui_isotherm_batchgui_kineticsgui_kinetics_batchgui_list_sheetsgui_parse_idsgui_previewgui_proximategui_read_excelgui_render_reportgui_snapshot_pnggui_tga_curvegui_tga_kissingergui_tga_stagesgui_tga_stages_batchgui_ultimategui_vant_hoffgui_write_csvgui_xrd_cigui_xrd_deconvolverun_biocharkit_gui

Dependencies:base64encbiocharkitbslibcachemcellrangerclicommonmarkcpp11crayoncrosstalkdigestDTevaluatefastmapfontawesomefsgluehighrhmshtmltoolshtmlwidgetshttpuvjquerylibjsonliteknitrlaterlazyevallifecyclemagrittrmemoisemimeotelpillarpkgconfigprettyunitsprogresspromisesR6rappdirsRcppreadxlrematchrlangrmarkdownsassshinysourcetoolstibbletinytexutf8vctrswithrxfunxtableyaml

Readme and manuals

Help Manual

Help pageTopics
Compute adsorption capacity and removal efficiency from an uploaded data framegui_adsorption
BET surface area from an uploaded data framegui_bet
Correlation matrix for display, in long formatgui_correlation
Render a data frame as an interactive DT tablegui_datatable
Automatic FTIR peak picking from an uploaded full spectrumgui_ftir_autopeaks
Baseline-correct an FTIR spectrum from an uploaded data framegui_ftir_baseline
Functional-group density from an uploaded full FTIR spectrumgui_ftir_density
Assign FTIR peak positions to functional groupsgui_ftir_peaks
Fit an adsorption isotherm from an uploaded data framegui_isotherm
Fit an adsorption isotherm separately per group in an uploaded data framegui_isotherm_batch
Fit adsorption kinetics from an uploaded data framegui_kinetics
Fit adsorption kinetics separately per group in an uploaded data framegui_kinetics_batch
List sheet names in an uploaded Excel workbookgui_list_sheets
Parse sample IDs from an uploaded data framegui_parse_ids
Preview the first rows of an uploaded data framegui_preview
Proximate analysis from an uploaded data framegui_proximate
Read a sheet of an uploaded Excel workbook into a data framegui_read_excel
Render the combined session reportgui_render_report
Snapshot a base-graphics plotting expression to a PNG filegui_snapshot_png
Build a canonical TGA curve data frame from uploaded columnsgui_tga_curve
Kissinger non-isothermal kinetics from an uploaded multi-heating-rate tablegui_tga_kissinger
Proximate analysis directly from an uploaded TGA curvegui_tga_stages
Proximate analysis from TGA curves, separately per sample in an uploaded long-format data framegui_tga_stages_batch
Ultimate (CHNS) analysis atomic ratios from an uploaded data framegui_ultimate
Van't Hoff thermodynamic analysis from an uploaded data framegui_vant_hoff
Write a results data frame to CSV (no row names)gui_write_csv
XRD crystallinity index for one or more samplesgui_xrd_ci
XRD peak deconvolution from an uploaded data framegui_xrd_deconvolve
Launch the biocharkit Shiny GUIrun_biocharkit_gui